PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14403_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 119aa    MW: 13850.3 Da    PI: 10.496
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14403_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-203596257
                 T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++R+t+t+eq+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  RrC14403_p1 35 STRWTPTTEQIRILKDLYYNngVRSPTADQIQKISARLrqygKIEGKNVFYWFQNHKARERQ 96
                 58*****************8678*************************************97 PP

2Wus_type_Homeobox117.18.3e-383498265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt+eQi+iL++ly+ +G+r+P++++iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
        RrC14403_p1 34 TSTRWTPTTEQIRILKDLYYnNGVRSPTADQIQKISARLRQYGKIEGKNVFYWFQNHKARERQKK 98
                       789***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-91196IPR009057Homeodomain-like
SuperFamilySSF466896.42E-131898IPR009057Homeodomain-like
PROSITE profilePS5007110.4463197IPR001356Homeobox domain
SMARTSM003894.3E-633101IPR001356Homeobox domain
CDDcd000863.13E-53698No hitNo description
PfamPF000469.1E-183696IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MEQPQYHNHH HQQTDQESGN NNKSGSGGYP CRQTSTRWTP TTEQIRILKD LYYNNGVRSP  60
TADQIQKISA RLRQYGKIEG KNVFYWFQNH KARERQKKRF SGTTMTTPTS SSPNSFTLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4784101e-159JQ478410.1 Brassica napus WUSCHEL mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752528.13e-68PREDICTED: protein WUSCHEL-like
SwissprotQ9SB921e-51WUS_ARATH; Protein WUSCHEL
TrEMBLA0A078HLE03e-68A0A078HLE0_BRANA; BnaA07g02390D protein
STRINGBra039894.1-P8e-67(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-43WOX family protein